MRIQC: individual T1w report

Summary

  • BIDS filename: sub-4149_ses-1_T1w.
  • Date and time: 2024-06-18, 13:57.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.3595789598158927
cnr3.7396005833896777
efc0.5468217216767433
fber3505.5130497568434
fwhmavg3.4407266666666665
fwhmx3.37531
fwhmy3.61991
fwhmz3.32696
icvscsf0.18853651365587376
icvsgm0.4359471579662027
icvswm0.3755163283779235
inumed1.2984840869903564
inurange0.36767754554748544
qi12.1188475729307335e-05
qi20.009639641890986527
rpvecsf27.08075563149948
rpvegm12.963645651720281
rpvewm18.076666445830455
sizex176
sizey256
sizez256
snrcsf2.5685953097403016
snrgm9.3519238060216
snrtotal9.63984964662589
snrwm16.999029824115766
snrdcsf30.382426245078022
snrdgm76.75026032389697
snrdtotal74.68814072288144
snrdwm116.93173559966937
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk20.157760012447532
summarybgmad5.602725261084904
summarybgmean10.784086991101098
summarybgmedian10.979471132159233
summarybgn2612568.0
summarybgp053.676846146583557
summarybgp9525.380451872944832
summarybgstdv7.579106634024989
summarycsfk1.2283644805568938
summarycsfmad92.97495433259814
summarycsfmean276.6677022839059
summarycsfmedian259.83046102523804
summarycsfn8245.0
summarycsfp05140.34317472279074
summarycsfp95466.43857407867904
summarycsfstdv101.15050148691326
summarygmk0.10775330339105027
summarygmmad68.59552819652599
summarygmmean655.4746086524895
summarygmmedian656.3681044727564
summarygmn20476.0
summarygmp05536.75570326671
summarygmp95768.3714768476784
summarygmstdv70.18364244072437
summarywmk0.6274062141096834
summarywmmad54.9672775614546
summarywmmean998.6513036779223
summarywmmedian1000.0000172555447
summarywmn211194.0
summarywmp05899.7548924535513
summarywmp951092.2275747656822
summarywmstdv58.82674835610609
tpmoverlapcsf0.17569835484027863
tpmoverlapgm0.4403713047504425
tpmoverlapwm0.502627968788147
wm2max0.41009424083769636
AcquisitionDuration318.417
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime08:36:40.852500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:ORBITZ
ImageOrientationPatientDICOM[0.0167244, 0.99986, 2.77888e-08, 0.0890365, -0.00148927, -0.996027]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.263
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber5
ShimSetting[2640, 5333, -7403, -34, 68, -871, 108, -259]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp262.452
md5sum9560635408681e3f19b82d4ef9629a76
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.